miRBase entry: cfa-mir-218-1

Stem-loop cfa-mir-218-1


Accession
MI0008079
Description
Canis lupus familiaris cfa-mir-218-1 precursor miRNA


Sequence

431499 reads, 600.0 reads per million, 82 experiments
UUGUGCUUGAUCUAACCAUGUgguugccagguaugaguaAAACAUGGUUCCGUCAAGCACcaug
..(((((((((..((((((((..((((((....)).)))).))))))))..)))))))))....

Structure
--UU         CU        gg    -  g 
    GUGCUUGAU  AACCAUGU  uugc ca g
    |||||||||  ||||||||  |||| ||  
    CACGAACUG  UUGGUACA  Aaug gu u
guac         CC        -A    a  a 


Annotation confidence Medium
Do you think this miRNA is real?

Genome context
3: 90029028-90029091 [-]

Database links

Mature cfa-miR-218-5p

Accession MIMAT0006672
Description Canis lupus familiaris cfa-miR-218-5p mature miRNA
Sequence 1 - UUGUGCUUGAUCUAACCAUGU - 21
Evidence experimental
Illumina [1]

Mature cfa-miR-218-1-3p

Accession MIMAT0051791
Description Canis lupus familiaris cfa-miR-218-1-3p mature miRNA
Sequence 40 - AAACAUGGUUCCGUCAAGCAC - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415