Stem-loop cfa-mir-574

Accession

MI0008080

Description

Canis lupus familiaris cfa-mir-574 precursor miRNA

Literature search

5 open access papers mention cfa-mir-574
(6 sentences)

Sequence

185489 reads, 342.0 reads per million, 82 experiments

UGAGUGUGUGUGUGUGAGUGUGUgucgcuccgggucCACGCUCAUGCACACACCCACA
((.(.(((((((((((((((((.(.(.(....)).)))))))))))))))))))))..

Structure

--  A U                 U u g u 
  UG G GUGUGUGUGUGAGUGUG g c c c
  || | ||||||||||||||||| | | |  
  AC C CACACACGUACUCGCAC c g g c
AC  - -                 - u - g 

Annotation confidence High

Genome context

3: 74274906-74274963 [-]

Mature cfa-miR-574-5p

• Accession: MIMAT0051793
• Description: Canis lupus familiaris cfa-miR-574-5p mature miRNA
• Sequence: 1 - UGAGUGUGUGUGUGUGAGUGUGU - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-574-3p

• Accession: MIMAT0006673
• Description: Canis lupus familiaris cfa-miR-574-3p mature miRNA
• Sequence: 37 - CACGCUCAUGCACACACCCACA - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415