Stem-loop cfa-mir-28

Accession

MI0008082

Description

Canis lupus familiaris cfa-mir-28 precursor miRNA

Literature search

6 open access papers mention cfa-mir-28
(61 sentences)

Sequence

949047 reads, 1492.0 reads per million, 82 experiments

AAGGAGCUCACAGUCUAUUGAGuugccuuucugacuuuccCACUAGAUUGUGAGCUCCUGGA
.((((((((((((((((.((((((........))))....)).))))))))))))))))...

Structure

--A                U  ----    gcc 
   AGGAGCUCACAGUCUA UG    AGuu   u
   |||||||||||||||| ||    ||||    
   UCCUCGAGUGUUAGAU AC    ucag   u
AGG                C  ccuu    ucu 

Annotation confidence High

Genome context

34: 20905413-20905474 [+]

Mature cfa-miR-28-5p

• Accession: MIMAT0051795
• Description: Canis lupus familiaris cfa-miR-28-5p mature miRNA
• Sequence: 1 - AAGGAGCUCACAGUCUAUUGAG - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-28-3p

• Accession: MIMAT0006675
• Description: Canis lupus familiaris cfa-miR-28-3p mature miRNA
• Sequence: 41 - CACUAGAUUGUGAGCUCCUGGA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415