Stem-loop cfa-mir-15b

Accession

MI0008083

Description

Canis lupus familiaris cfa-mir-15b precursor miRNA

Literature search

6 open access papers mention cfa-mir-15b
(8 sentences)

Sequence

232568 reads, 269.0 reads per million, 82 experiments

UAGCAGCACAUCAUGGUUUACAuacuacagucaagaugCGAAUCAUUAUUUGCUGCUCUA
.(((((((.((.(((((((.(((.((.......))))).))))))).)).)))))))...

Structure

--U       C  C       A   a  ac 
   AGCAGCA AU AUGGUUU CAu cu  a
   ||||||| || ||||||| ||| ||  g
   UCGUCGU UA UACUAAG gua ga  u
AUC       U  U       C   -  ac 

Annotation confidence High

Genome context

34: 26517327-26517386 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-15b

Mature cfa-miR-15b-5p

• Accession: MIMAT0006676
• Description: Canis lupus familiaris cfa-miR-15b-5p mature miRNA
• Sequence: 1 - UAGCAGCACAUCAUGGUUUACA - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-15b-3p

• Accession: MIMAT0051796
• Description: Canis lupus familiaris cfa-miR-15b-3p mature miRNA
• Sequence: 39 - CGAAUCAUUAUUUGCUGCUCUA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415