Stem-loop cfa-mir-16-2

Accession

MI0008084

Description

Canis lupus familiaris cfa-mir-16-2 precursor miRNA

Sequence

2040534 reads, 3640.0 reads per million, 82 experiments

UAGCAGCACGUAAAUAUUGGCGuagugaaauaaaaauuaaacACCAAUAUUAUUGUGCUGCUUUA
.(((((((((..((((((((.((.................)).))))))))..)))))))))...

Structure

--U         UA        C  agugaaa 
   AGCAGCACG  AAUAUUGG Gu       u
   |||||||||  |||||||| ||       a
   UCGUCGUGU  UUAUAACC ca       a
AUU         UA        A  aauuaaa 

Annotation confidence High

Genome context

34: 26517471-26517535 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-16-2

Mature cfa-miR-16-5p

• Accession: MIMAT0006648
• Description: Canis lupus familiaris cfa-miR-16-5p mature miRNA
• Sequence: 1 - UAGCAGCACGUAAAUAUUGGCG - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-16-2-3p

• Accession: MIMAT0051763
• Description: Canis lupus familiaris cfa-miR-16-2-3p mature miRNA
• Sequence: 43 - ACCAAUAUUAUUGUGCUGCUUUA - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415