Stem-loop cfa-mir-1839

Accession

MI0008087

Description

Canis lupus familiaris cfa-mir-1839 precursor miRNA

Literature search

1 open access papers mention cfa-mir-1839
(5 sentences)

Sequence

175463 reads, 134.0 reads per million, 81 experiments

aaggaaAAGGUAGAUAGAACAGGUCUUGuuagcaaaauaaauucaAGACCUACUUAAUCUACCAACAGcaauu
........(((((((.((..((((((((...............))))))))..)).)))))))..........

Structure

--aaggaaAA       A  AC        uuagca 
          GGUAGAU GA  AGGUCUUG      a
          ||||||| ||  ||||||||      a
          CCAUCUA UU  UCCAGAac      a
uuaacGACAA       A  CA        uuaaau 

Annotation confidence High

Genome context

3: 54999383-54999455 [+]

Mature cfa-miR-1839-5p

• Accession: MIMAT0006677
• Description: Canis lupus familiaris cfa-miR-1839-5p mature miRNA
• Sequence: 7 - AAGGUAGAUAGAACAGGUCUUG - 28
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-1839-3p

• Accession: MIMAT0051797
• Description: Canis lupus familiaris cfa-miR-1839-3p mature miRNA
• Sequence: 46 - AGACCUACUUAAUCUACCAACAG - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415