Stem-loop cfa-mir-1840

Accession

MI0008089

Description

Canis lupus familiaris cfa-mir-1840 precursor miRNA

Literature search

1 open access papers mention cfa-mir-1840
(1 sentences)

Sequence

13681 reads, 13.0 reads per million, 77 experiments

UUAGGGCGCGUCACGUGACGGgcucgucgcuccgccgUCACGUGACGGGCCUCGGCG
...((((.(((((((((((((((.....))....))))))))))))).)))).....

Structure

--UUA    G             ----  u 
     GGGC CGUCACGUGACGG    gc c
     |||| |||||||||||||    || g
     UCCG GCAGUGCACUgcc    cg u
GCGGC    G             gccu  c 

Annotation confidence High

Genome context

37: 25750219-25750275 [+]

Mature cfa-miR-1840-5p

• Accession: MIMAT0051799
• Description: Canis lupus familiaris cfa-miR-1840-5p mature miRNA
• Sequence: 1 - UUAGGGCGCGUCACGUGACGG - 21
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-1840-3p

• Accession: MIMAT0006679
• Description: Canis lupus familiaris cfa-miR-1840-3p mature miRNA
• Sequence: 38 - UCACGUGACGGGCCUCGGCG - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415