Stem-loop cfa-mir-143

Accession

MI0008092

Description

Canis lupus familiaris cfa-mir-143 precursor miRNA

Literature search

21 open access papers mention cfa-mir-143
(52 sentences)

Sequence

60966925 reads, 98358.0 reads per million, 82 experiments

GGUGCAGUGCUGCAUCUCUGGucaguugggagucUGAGAUGAAGCACUGUAGCUC
(.(((((((((.((((((.((((......)).)).)))))).))))))))).)..

Structure

-- G         G      U  -  ag 
  G UGCAGUGCU CAUCUC GG uc  u
  | ||||||||| |||||| || ||   
  C AUGUCACGA GUAGAG cu ag  u
CU G         A      U  g  gg 

Annotation confidence High

Genome context

4: 60017094-60017148 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-143

Mature cfa-miR-143-5p

• Accession: MIMAT0051801
• Description: Canis lupus familiaris cfa-miR-143-5p mature miRNA
• Sequence: 1 - GGUGCAGUGCUGCAUCUCUGG - 21
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-143-3p

• Accession: MIMAT0006682
• Description: Canis lupus familiaris cfa-miR-143-3p mature miRNA
• Sequence: 35 - UGAGAUGAAGCACUGUAGCUC - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415