Stem-loop cfa-mir-143

Accession

MI0008092

Description

Canis familiaris cfa-mir-143 precursor miRNA

Sequence

ggugcagugcugcaucucuggucaguugggagucUGAGAUGAAGCACUGUAGCUC
(.(((((((((.((((((.((((......)).)).)))))).))))))))).)..

Structure

-- g         g      u  -  ag 
  g ugcagugcu caucuc gg uc  u
  | ||||||||| |||||| || ||   
  C AUGUCACGA GUAGAG cu ag  u
CU G         A      U  g  gg 

Annotation confidence Not enough data

Genome context

chr4: 59534535-59534589 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-143

Mature cfa-miR-143

• Accession: MIMAT0006682
• Description: Canis familiaris cfa-miR-143 mature miRNA
• Sequence: 35 - UGAGAUGAAGCACUGUAGCUC - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415