Stem-loop cfa-mir-378

Accession

MI0008093

Description

Canis lupus familiaris cfa-mir-378 precursor miRNA

Literature search

5 open access papers mention cfa-mir-378
(6 sentences)

Sequence

7204894 reads, 13355.0 reads per million, 82 experiments

CUCCUGACUCCAGGUCCUGUGUguuaccucgaaauagcACUGGACUUGGAGUCAGAAGGC
((.((((((((((((((.((((..(........)..)))).)))))))))))))).))..

Structure

--  C              U    gu acc 
  CU CUGACUCCAGGUCC GUGU  u   u
  || |||||||||||||| ||||  |    
  GA GACUGAGGUUCAGG CAcg  a   c
CG  A              U    au aag 

Annotation confidence High

Genome context

4: 59758554-59758613 [-]

Mature cfa-miR-378-5p

• Accession: MIMAT0051802
• Description: Canis lupus familiaris cfa-miR-378-5p mature miRNA
• Sequence: 1 - CUCCUGACUCCAGGUCCUGUGU - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-378-3p

• Accession: MIMAT0006683
• Description: Canis lupus familiaris cfa-miR-378-3p mature miRNA
• Sequence: 39 - ACUGGACUUGGAGUCAGAAGGC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415