Stem-loop cfa-mir-146a

Accession

MI0008094

Description

Canis lupus familiaris cfa-mir-146a precursor miRNA

Literature search

29 open access papers mention cfa-mir-146a
(96 sentences)

Sequence

2495138 reads, 2006.0 reads per million, 81 experiments

UGAGAACUGAAUUCCAUGGGUUgugucagugucagACCUGUGAAGUUCAGUUCUUCAg
.((((((((((((.((((((((.((.......)))))))))).))))))))))))...

Structure

--U            C        g  uc 
   GAGAACUGAAUU CAUGGGUU ug  a
   |||||||||||| |||||||| ||  g
   UUCUUGACUUGA GUGUCCAg ac  u
gAC            A        -  ug 

Annotation confidence High

Genome context

4: 50684050-50684107 [-]

Mature cfa-miR-146a-5p

• Accession: MIMAT0006684
• Description: Canis lupus familiaris cfa-miR-146a-5p mature miRNA
• Sequence: 1 - UGAGAACUGAAUUCCAUGGGUU - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-146a-3p

• Accession: MIMAT0051803
• Description: Canis lupus familiaris cfa-miR-146a-3p mature miRNA
• Sequence: 36 - ACCUGUGAAGUUCAGUUCUUCA - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415