Stem-loop cfa-mir-1271

Accession

MI0008095

Description

Canis lupus familiaris cfa-mir-1271 precursor miRNA

Literature search

2 open access papers mention cfa-mir-1271
(2 sentences)

Sequence

235561 reads, 326.0 reads per million, 82 experiments

CUUGGCACCUAGUAAGCACUCAguaaauacuuguugAGUGCCUGCUAUGUGCCAGGCA
((((((((.(((((.(((((((((((....))))))))))).))))).))))))))..

Structure

--        C     A           a 
  CUUGGCAC UAGUA GCACUCAguaa u
  |||||||| ||||| |||||||||||  
  GGACCGUG AUCGU CGUGAguuguu a
AC        U     C           c 

Annotation confidence High

Genome context

4: 37318674-37318731 [-]

Mature cfa-miR-1271-5p

• Accession: MIMAT0006685
• Description: Canis lupus familiaris cfa-miR-1271-5p mature miRNA
• Sequence: 1 - CUUGGCACCUAGUAAGCACUCA - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-1271-3p

• Accession: MIMAT0051804
• Description: Canis lupus familiaris cfa-miR-1271-3p mature miRNA
• Sequence: 37 - AGUGCCUGCUAUGUGCCAGGCA - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415