Stem-loop cfa-mir-218-2

Accession

MI0008097

Description

Canis lupus familiaris cfa-mir-218-2 precursor miRNA

Sequence

426838 reads, 605.0 reads per million, 80 experiments

UUGUGCUUGAUCUAACCAUGUgguggaacgauggaaacggaacAUGGUUCUGUCAAGCACCGCG
..(((((((((..((((((((..((............))..))))))))..)))))))))....

Structure

--UU         CU        gg  gaacg 
    GUGCUUGAU  AACCAUGU  ug     a
    |||||||||  ||||||||  ||      
    CACGAACUG  UUGGUAca  gc     u
GCGC         UC        ag  aaagg 

Annotation confidence High

Genome context

4: 43432368-43432431 [+]

Mature cfa-miR-218-5p

• Accession: MIMAT0006672
• Description: Canis lupus familiaris cfa-miR-218-5p mature miRNA
• Sequence: 1 - UUGUGCUUGAUCUAACCAUGU - 21
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-218-2-3p

• Accession: MIMAT0051792
• Description: Canis lupus familiaris cfa-miR-218-2-3p mature miRNA
• Sequence: 44 - AUGGUUCUGUCAAGCACCGCG - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415