Stem-loop cfa-mir-328

Accession

MI0008099

Description

Canis lupus familiaris cfa-mir-328 precursor miRNA

Literature search

9 open access papers mention cfa-mir-328
(24 sentences)

Sequence

24001 reads, 49.0 reads per million, 82 experiments

aGGGGGGCAGGAAGGGCUCAGGGAgaaagugugugcagcccCUGGCCCUCUCUGCCCUUCCGU
.((((((((((.(((((.(((((................)))))))))).))))))))))...

Structure

--a          A     U     Agaaagu 
   GGGGGGCAGG AGGGC CAGGG       g
   |||||||||| ||||| |||||        
   CUUCCCGUCU UCCCG GUCcc       u
UGC          C     -     cgacgug 

Annotation confidence High

Genome context

5: 82601335-82601397 [+]

Mature cfa-miR-328-5p

• Accession: MIMAT0051808
• Description: Canis lupus familiaris cfa-miR-328-5p mature miRNA
• Sequence: 2 - GGGGGGCAGGAAGGGCUCAGGGA - 24
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-328-3p

• Accession: MIMAT0006688
• Description: Canis lupus familiaris cfa-miR-328-3p mature miRNA
• Sequence: 42 - CUGGCCCUCUCUGCCCUUCCGU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415