Stem-loop cfa-mir-140

Accession

MI0008100

Description

Canis lupus familiaris cfa-mir-140 precursor miRNA

Literature search

7 open access papers mention cfa-mir-140
(13 sentences)

Sequence

2585398 reads, 5000.0 reads per million, 82 experiments

CAGUGGUUUUACCCUAUGGUAGguuacgucaugcuguucUACCACAGGGUAGAACCACGGA
..(((((((((((((.(((((((.((.((...)))).))))))).)))))))))))))...

Structure

-CA             A       u  c  c 
   GUGGUUUUACCCU UGGUAGg ua gu  
   ||||||||||||| ||||||| || || a
   CACCAAGAUGGGA ACCAUcu gu cg  
AGG             C       u  -  u 

Annotation confidence High

Genome context

5: 80244523-80244583 [-]

Mature cfa-miR-140-5p

• Accession: MIMAT0051809
• Description: Canis lupus familiaris cfa-miR-140-5p mature miRNA
• Sequence: 1 - CAGUGGUUUUACCCUAUGGUAG - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-140-3p

• Accession: MIMAT0006689
• Description: Canis lupus familiaris cfa-miR-140-3p mature miRNA
• Sequence: 40 - UACCACAGGGUAGAACCACGGA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415