Stem-loop cfa-mir-34a

Accession

MI0008101

Description

Canis lupus familiaris cfa-mir-34a precursor miRNA

Literature search

28 open access papers mention cfa-mir-34a
(57 sentences)

Sequence

104734 reads, 106.0 reads per million, 76 experiments

UGGCAGUGUCUUAGCUGGUUGUUgugaguaauagugaaggaagCAAUCAGCAAGUAUACUGCCCUa
.(((((((((((.((((((((((..................))))))))))))).))))))))...

Structure

--U        -   A          gugaguaa 
   GGCAGUGU CUU GCUGGUUGUU        u
   |||||||| ||| ||||||||||         
   CCGUCAUA GAA CGACUAACga        a
aUC        U   -          aggaagug 

Annotation confidence High

Genome context

5: 62712027-62712092 [-]

Mature cfa-miR-34a-5p

• Accession: MIMAT0006690
• Description: Canis lupus familiaris cfa-miR-34a-5p mature miRNA
• Sequence: 1 - UGGCAGUGUCUUAGCUGGUUGUU - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-34a-3p

• Accession: MIMAT0051810
• Description: Canis lupus familiaris cfa-miR-34a-3p mature miRNA
• Sequence: 44 - CAAUCAGCAAGUAUACUGCCCU - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415