Stem-loop cfa-mir-99a-2

Accession

MI0008102

Description

Canis lupus familiaris cfa-mir-99a-2 precursor miRNA

Literature search

1 open access papers mention cfa-mir-99a-2
(1 sentences)

Sequence

22574067 reads, 17131.0 reads per million, 82 experiments

AACCCGUAGAUCCGAUCUUGUGgugauaguccacaCAAGCUUGUGUCUAUAGGUAUG
.(((.((((((.(((.((((((.((......)))))))).))).)))))).)))...

Structure

--A   C      C   U      g  au 
   ACC GUAGAU CGA CUUGUG ug  a
   ||| |||||| ||| |||||| ||   
   UGG UAUCUG GUU GAACac ac  g
GUA   A      U   C      -  cu 

Annotation confidence High

Genome context

5: 11996862-11996918 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-99a-2

Mature cfa-miR-99a-5p

• Accession: MIMAT0006668
• Description: Canis lupus familiaris cfa-miR-99a-5p mature miRNA
• Sequence: 1 - AACCCGUAGAUCCGAUCUUGUG - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-99a-2-3p

• Accession: MIMAT0051786
• Description: Canis lupus familiaris cfa-miR-99a-2-3p mature miRNA
• Sequence: 36 - CAAGCUUGUGUCUAUAGGUAUG - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415