Stem-loop cfa-mir-125b-1

Accession

MI0008103

Description

Canis lupus familiaris cfa-mir-125b-1 precursor miRNA

Literature search

1 open access papers mention cfa-mir-125b-1
(1 sentences)

Sequence

2307328 reads, 5774.0 reads per million, 82 experiments

UCCCUGAGACCCUAACUUGUGAuguuuaccguuuaaauccACGGGUUAGGCUCUUGGGAGC
((((.((((.(((((((((((..(((((.....))))).))))))))))).))))))))..

Structure

--    U    C           Au     c 
  UCCC GAGA CCUAACUUGUG  guuua c
  |||| |||| |||||||||||  ||||| g
  AGGG UUCU GGAUUGGGCAc  uaaau u
CG    -    C           -c     u 

Annotation confidence High

Genome context

5: 12047627-12047687 [+]

Mature cfa-miR-125b-5p

• Accession: MIMAT0006670
• Description: Canis lupus familiaris cfa-miR-125b-5p mature miRNA
• Sequence: 1 - UCCCUGAGACCCUAACUUGUGA - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-125b-1-3p

• Accession: MIMAT0051789
• Description: Canis lupus familiaris cfa-miR-125b-1-3p mature miRNA
• Sequence: 41 - ACGGGUUAGGCUCUUGGGAGC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415