miRBase entry: cfa-mir-125b-1

Stem-loop cfa-mir-125b-1


Accession
MI0008103
Description
Canis familiaris cfa-mir-125b-1 precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

UCCCUGAGACCCUAACUUGUGAuguuuaccguuuaaauccacggguuaggcucuugggagc
((((.((((.(((((((((((..(((((.....))))).))))))))))).))))))))..

Structure
--    U    C           Au     c 
  UCCC GAGA CCUAACUUGUG  guuua c
  |||| |||| |||||||||||  ||||| g
  aggg uucu ggauugggcac  uaaau u
cg    -    c           -c     u 


Annotation confidence Not enough data
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Genome context
chr5: 12097672-12097732 [+]

Database links

Mature cfa-miR-125b

Accession MIMAT0006670
Description Canis familiaris cfa-miR-125b mature miRNA
Sequence 1 - UCCCUGAGACCCUAACUUGUGA - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415