Stem-loop cfa-mir-497

Accession

MI0008104

Description

Canis lupus familiaris cfa-mir-497 precursor miRNA

Literature search

5 open access papers mention cfa-mir-497
(5 sentences)

Sequence

205653 reads, 306.0 reads per million, 80 experiments

CAGCAGCACACUGUGGUUUGUAcgguacuguggccacguCCAGACCACACUGUGGUGUUAGGgugag
.((((.((((.(((((((((.(((............))).))))))))).)))).))))........

Structure

-------C    G    C         U   guacu 
        AGCA CACA UGUGGUUUG Acg     g
        |||| |||| ||||||||| |||      
        UUGU GUGU ACACCAGAC ugc     u
gagugGGA    G    C         C   accgg 

Annotation confidence High

Genome context

5: 32150741-32150807 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-497

Mature cfa-miR-497-5p

• Accession: MIMAT0006691
• Description: Canis lupus familiaris cfa-miR-497-5p mature miRNA
• Sequence: 1 - CAGCAGCACACUGUGGUUUGUA - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-497-3p

• Accession: MIMAT0051811
• Description: Canis lupus familiaris cfa-miR-497-3p mature miRNA
• Sequence: 40 - CCAGACCACACUGUGGUGUUAGG - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415