Stem-loop cfa-mir-195

Accession

MI0008105

Description

Canis lupus familiaris cfa-mir-195 precursor miRNA

Literature search

16 open access papers mention cfa-mir-195
(22 sentences)

Sequence

488023 reads, 667.0 reads per million, 82 experiments

UAGCAGCACAGAAAUAUUGGCAcugggaagagagucugCCAAUAUUGGCUGUGCUGCUCUA
.((((((((((.((((((((((((........)))..)))))))))..))))))))))...

Structure

--U          -A         --   ggg 
   AGCAGCACAG  AAUAUUGGC  Acu   a
   ||||||||||  |||||||||  |||    
   UCGUCGUGUC  UUAUAACCg  uga   a
AUC          GG         uc   gag 

Annotation confidence High

Genome context

5: 32150422-32150482 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-195

Mature cfa-miR-195-5p

• Accession: MIMAT0006692
• Description: Canis lupus familiaris cfa-miR-195-5p mature miRNA
• Sequence: 1 - UAGCAGCACAGAAAUAUUGGCA - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-195-3p

• Accession: MIMAT0051812
• Description: Canis lupus familiaris cfa-miR-195-3p mature miRNA
• Sequence: 39 - CCAAUAUUGGCUGUGCUGCUCUA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415