Stem-loop cfa-mir-34c

Accession

MI0008106

Description

Canis lupus familiaris cfa-mir-34c precursor miRNA

Literature search

8 open access papers mention cfa-mir-34c
(16 sentences)

Sequence

655177 reads, 4420.0 reads per million, 75 experiments

AGGCAGUGUAGUUAGCUGAUUGCUaauaguaccAAUCACUAACCACACGGCCAGG
.(((.((((.(((((.((((((.((....)).))))))))))).)))).)))...

Structure

--A   A    A     C      C  a 
   GGC GUGU GUUAG UGAUUG Ua u
   ||| |||| ||||| |||||| ||  
   CCG CACA CAAUC ACUAAc au a
GGA   G    C     -      c  g 

Annotation confidence High

Genome context

5: 21583762-21583816 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-34c

Mature cfa-miR-34c-5p

• Accession: MIMAT0006693
• Description: Canis lupus familiaris cfa-miR-34c-5p mature miRNA
• Sequence: 1 - AGGCAGUGUAGUUAGCUGAUUGCU - 24
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-34c-3p

• Accession: MIMAT0051813
• Description: Canis lupus familiaris cfa-miR-34c-3p mature miRNA
• Sequence: 34 - AAUCACUAACCACACGGCCAGG - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415