Stem-loop cfa-mir-197

Accession

MI0008112

Description

Canis lupus familiaris cfa-mir-197 precursor miRNA

Literature search

3 open access papers mention cfa-mir-197
(3 sentences)

Sequence

186402 reads, 257.0 reads per million, 82 experiments

CGGGUAGAGAGGGCAGUGGGAGGuaagagcucuucacccUUCACCACCUUCUCCACCCAGC
.((((.(((((((..(((((.((((((....))).))).)))))..))))))).))))...

Structure

--C    A       CA     A   -   a 
   GGGU GAGAGGG  GUGGG GGu aag g
   |||| |||||||  ||||| ||| |||  
   CCCA CUCUUCC  CACUU cca uuc c
CGA    C       AC     c   c   u 

Annotation confidence High

Genome context

6: 42602914-42602974 [-]

Mature cfa-miR-197-5p

• Accession: MIMAT0051818
• Description: Canis lupus familiaris cfa-miR-197-5p mature miRNA
• Sequence: 1 - CGGGUAGAGAGGGCAGUGGGAGG - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-197-3p

• Accession: MIMAT0006698
• Description: Canis lupus familiaris cfa-miR-197-3p mature miRNA
• Sequence: 40 - UUCACCACCUUCUCCACCCAGC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415