Stem-loop cfa-mir-193b

Accession

MI0008113

Description

Canis lupus familiaris cfa-mir-193b precursor miRNA

Literature search

6 open access papers mention cfa-mir-193b
(8 sentences)

Sequence

105631 reads, 263.0 reads per million, 81 experiments

CGGGGUUUUGAGGGCGAGAUGAguuuauguuugauccAACUGGCCCACAAAGUCCCGCU
((((((((((.((((.((.((.(.(((....))).))).)).)))).))))))))))..

Structure

--          A    G  A  A u   u 
  CGGGGUUUUG GGGC AG UG g uua g
  |||||||||| |||| || || | |||  
  GCCCUGAAAC CCCG UC Ac c agu u
UC          A    G  A  - u   u 

Annotation confidence High

Genome context

6: 29041272-29041330 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-193b

Mature cfa-miR-193b-5p

• Accession: MIMAT0006699
• Description: Canis lupus familiaris cfa-miR-193b-5p mature miRNA
• Sequence: 1 - CGGGGUUUUGAGGGCGAGAUGA - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-193b-3p

• Accession: MIMAT0051819
• Description: Canis lupus familiaris cfa-miR-193b-3p mature miRNA
• Sequence: 38 - AACUGGCCCACAAAGUCCCGCU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415