Stem-loop cfa-mir-590

Accession

MI0008114

Description

Canis lupus familiaris cfa-mir-590 precursor miRNA

Literature search

5 open access papers mention cfa-mir-590
(43 sentences)

Sequence

125282 reads, 222.0 reads per million, 81 experiments

GAGCUUAUUCAUAAAAGUACAGuaugauccaguaaaccugUAAUUUUAUGUAUAAGCUAGU
.(((((((.(((((((.((((((((......)))...))))).))))))).)))))))...

Structure

--G       U       G     ---   ga 
   AGCUUAU CAUAAAA UACAG   uau  u
   ||||||| ||||||| |||||   |||   
   UCGAAUA GUAUUUU AUguc   aug  c
UGA       U       A     caa   ac 

Annotation confidence High

Genome context

6: 6000974-6001034 [-]

Mature cfa-miR-590-5p

• Accession: MIMAT0051820
• Description: Canis lupus familiaris cfa-miR-590-5p mature miRNA
• Sequence: 1 - GAGCUUAUUCAUAAAAGUACAG - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-590-3p

• Accession: MIMAT0006700
• Description: Canis lupus familiaris cfa-miR-590-3p mature miRNA
• Sequence: 41 - UAAUUUUAUGUAUAAGCUAGU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415