miRBase entry: cfa-mir-1842

Stem-loop cfa-mir-1842


Accession
MI0008116
Description
Canis lupus familiaris cfa-mir-1842 precursor miRNA


Sequence

8694 reads, 16.0 reads per million, 71 experiments
UGGCUCUGCGAGGUCAGCUCAAggugggucuggauauuGAGCAGGCCUGUCAGGGCGUUG
..((((((..(((((.((((((.((........)).)))))).)))))..))))))....

Structure
--UG      CG     A      g  ggg 
    GCUCUG  AGGUC GCUCAA gu   u
    ||||||  ||||| |||||| ||    
    CGGGAC  UCCGG CGAGuu ua   c
GUUG      UG     A      a  ggu 


Annotation confidence High
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Genome context
6: 39067521-39067580 [+]

Database links

Mature cfa-miR-1842-5p

Accession MIMAT0006701
Description Canis lupus familiaris cfa-miR-1842-5p mature miRNA
Sequence 1 - UGGCUCUGCGAGGUCAGCUCAA - 22
Evidence experimental
Illumina [1]

Mature cfa-miR-1842-3p

Accession MIMAT0051821
Description Canis lupus familiaris cfa-miR-1842-3p mature miRNA
Sequence 39 - GAGCAGGCCUGUCAGGGCGUUG - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415