Stem-loop cfa-mir-1-2

Accession

MI0008118

Description

Canis lupus familiaris cfa-mir-1-2 precursor miRNA

Literature search

3 open access papers mention cfa-mir-1-2
(3 sentences)

Sequence

24495790 reads, 16111.0 reads per million, 82 experiments

CAUACUUCUUUAUGUACCCAUAugaacauacaaugcuaUGGAAUGUAAAGAAGUAUGUA
(((((((((((((((..(((((..(........)..))))).)))))))))))))))..

Structure

--               AC     ug aca 
  CAUACUUCUUUAUGU  CCAUA  a   u
  |||||||||||||||  |||||  |    
  GUAUGAAGAAAUGUA  GGUau  u   a
AU               -A     cg aac 

Annotation confidence High

Genome context

7: 66279106-66279164 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-1-2

Mature cfa-miR-1-2-5p

• Accession: MIMAT0051772
• Description: Canis lupus familiaris cfa-miR-1-2-5p mature miRNA
• Sequence: 1 - CAUACUUCUUUAUGUACCCAUA - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-1-3p

• Accession: MIMAT0006656
• Description: Canis lupus familiaris cfa-miR-1-3p mature miRNA
• Sequence: 39 - UGGAAUGUAAAGAAGUAUGUA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415