Stem-loop cfa-mir-29b-2

Accession

MI0008121

Description

Canis lupus familiaris cfa-mir-29b-2 precursor miRNA

Sequence

564205 reads, 1218.0 reads per million, 82 experiments

agCUGGUUUCACAUGGUGGCUUAGAuuuuuccaucuuuguaucUAGCACCAUUUGAAAUCAGUGUU
.((((((((((.((((((.((.((((..............)))))))))))).))))))))))...

Structure

--a          C      G  U    uuuucc 
   gCUGGUUUCA AUGGUG CU AGAu      a
   |||||||||| |||||| || ||||       
   UGACUAAAGU UACCAC GA Ucua      u
UUG          U      -  -    uguuuc 

Annotation confidence High

Genome context

7: 6340469-6340534 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-29b-2

Mature cfa-miR-29b-2-5p

• Accession: MIMAT0051736
• Description: Canis lupus familiaris cfa-miR-29b-2-5p mature miRNA
• Sequence: 3 - CUGGUUUCACAUGGUGGCUUAGA - 25
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-29b-3p

• Accession: MIMAT0006625
• Description: Canis lupus familiaris cfa-miR-29b-3p mature miRNA
• Sequence: 44 - UAGCACCAUUUGAAAUCAGUGUU - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415