Stem-loop cfa-mir-29c-1

Accession

MI0008122

Description

Canis lupus familiaris cfa-mir-29c-1 precursor miRNA

Sequence

563311 reads, 1626.0 reads per million, 82 experiments

ACCGAUUUCUCCUGGUGUUCAGAgucuguuuuugucUAGCACCAUUUGAAAUCGGUUA
(((((((((...(((((((.(((...........))))))))))...)))))))))..

Structure

--         UCC       C   gucu 
  ACCGAUUUC   UGGUGUU AGA    g
  |||||||||   ||||||| |||    u
  UGGCUAAAG   ACCACGA Ucu    u
AU         UUU       -   guuu 

Annotation confidence High

Genome context

7: 6339930-6339987 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-29c-1

Mature cfa-miR-29c-5p

• Accession: MIMAT0051823
• Description: Canis lupus familiaris cfa-miR-29c-5p mature miRNA
• Sequence: 1 - ACCGAUUUCUCCUGGUGUUCAGA - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-29c-3p

• Accession: MIMAT0006705
• Description: Canis lupus familiaris cfa-miR-29c-3p mature miRNA
• Sequence: 37 - UAGCACCAUUUGAAAUCGGUUA - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415