miRBase entry: cfa-mir-1843

Stem-loop cfa-mir-1843


Accession
MI0008123
Description
Canis lupus familiaris cfa-mir-1843 precursor miRNA


Sequence

5725 reads, 7.0 reads per million, 75 experiments
ACUGGAGGUCUCUGUCUGGCUUaggacagcuggcuaagUCUGAUCGUUCCCCUCCAUACA
..((((((...(.(((.(((((((.........))))))).))).)....))))))....

Structure
--AC      -UCU U   U       gac 
    UGGAGG    C GUC GGCUUag   a
    ||||||    | ||| |||||||   g
    ACCUCC    G UAG CUgaauc   c
ACAU      CCUU C   U       ggu 


Annotation confidence Medium
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Genome context
7: 23288070-23288129 [+]

Database links

Mature cfa-miR-1843-5p

Accession MIMAT0006706
Description Canis lupus familiaris cfa-miR-1843-5p mature miRNA
Sequence 1 - ACUGGAGGUCUCUGUCUGGCUU - 22
Evidence experimental
Illumina [1]

Mature cfa-miR-1843-3p

Accession MIMAT0051824
Description Canis lupus familiaris cfa-miR-1843-3p mature miRNA
Sequence 39 - UCUGAUCGUUCCCCUCCAUACA - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415