miRBase entry: cfa-mir-181a-1

Stem-loop cfa-mir-181a-1

Accession

MI0008126

Description

Canis familiaris cfa-mir-181a-1 precursor miRNA

Sequence

AACAUUCAACGCUGUCGGUGAGuuuggaauuaaaaucaaaaccaucgaccguugauuguacc
.(((.((((((..(((((((.((((.((.......)).))))))))))))))))).)))...

Structure

--A   U      CU       A    g  au 
   ACA UCAACG  GUCGGUG Guuu ga  u
   ||| ||||||  ||||||| |||| ||  a
   ugu aguugc  cagcuac caaa cu  a
cca   u      --       -    a  aa

Annotation confidence Not enough data

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Genome context

chr7: 4055465-4055526 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-181a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-181a

Accession	MIMAT0006707
Description	Canis familiaris cfa-miR-181a mature miRNA
Sequence	1 - AACAUUCAACGCUGUCGGUGAG - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415