Stem-loop cfa-mir-181a-1

Accession

MI0008126

Description

Canis lupus familiaris cfa-mir-181a-1 precursor miRNA

Literature search

1 open access papers mention cfa-mir-181a-1
(1 sentences)

Sequence

10921161 reads, 30286.0 reads per million, 82 experiments

AACAUUCAACGCUGUCGGUGAGuuuggaauuaaaaucaaaACCAUCGACCGUUGAUUGUACC
.(((.((((((..(((((((.((((.((.......)).))))))))))))))))).)))...

Structure

--A   U      CU       A    g  au 
   ACA UCAACG  GUCGGUG Guuu ga  u
   ||| ||||||  ||||||| |||| ||  a
   UGU AGUUGC  CAGCUAC CAaa cu  a
CCA   U      --       -    a  aa 

Annotation confidence High

Genome context

7: 3709035-3709096 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-181a-1

Mature cfa-miR-181a-5p

• Accession: MIMAT0006707
• Description: Canis lupus familiaris cfa-miR-181a-5p mature miRNA
• Sequence: 1 - AACAUUCAACGCUGUCGGUGAG - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-181a-1-3p

• Accession: MIMAT0051825
• Description: Canis lupus familiaris cfa-miR-181a-1-3p mature miRNA
• Sequence: 41 - ACCAUCGACCGUUGAUUGUACC - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415