Stem-loop cfa-mir-181b-1

Accession

MI0008127

Description

Canis lupus familiaris cfa-mir-181b-1 precursor miRNA

Sequence

1054440 reads, 2767.0 reads per million, 79 experiments

AACAUUCAUUGCUGUCGGUGGGUUGaacuguguggacaagCUCACUGAACAAUGAAUGCAAc
..(((((((((...((((((((((....(((....))))))))))))).)))))))))....

Structure

--AA         CUG          Gaac   g 
    CAUUCAUUG   UCGGUGGGUU    ugu u
    |||||||||   ||||||||||    |||  
    GUAAGUAAC   AGUCACUCga    aca g
cAAC         --A          ----   g 

Annotation confidence High

Genome context

7: 3709221-3709282 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-181b-1

Mature cfa-miR-181b-1-5p

• Accession: MIMAT0060785
• Description: Canis lupus familiaris cfa-miR-181b-1-5p mature miRNA
• Sequence: 1 - AACAUUCAUUGCUGUCGGUGGGUUG - 25
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-181b-1-3p

• Accession: MIMAT0051827
• Description: Canis lupus familiaris cfa-miR-181b-1-3p mature miRNA
• Sequence: 41 - CUCACUGAACAAUGAAUGCAA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415