Stem-loop cfa-mir-342

Accession

MI0008128

Description

Canis lupus familiaris cfa-mir-342 precursor miRNA

Literature search

6 open access papers mention cfa-mir-342
(8 sentences)

Sequence

223068 reads, 485.0 reads per million, 82 experiments

gggUGCUAUCUGUGAUUGAGGGACAuggcaaauagaauugUCUCACACAGAAAUCGCACCCGU
((((((..((((((.....((((((...(.....)...)))))).))))))....))))))..

Structure

--      --UA      AUUGA      ugg a 
  gggUGC    UCUGUG     GGGACA   c a
  ||||||    ||||||     ||||||   | a
  CCCACG    AGACAC     CUCUgu   g u
UG      CUAA      ----A      uaa a 

Annotation confidence Medium

Genome context

8: 68710010-68710072 [+]

Mature cfa-miR-342-5p

• Accession: MIMAT0051829
• Description: Canis lupus familiaris cfa-miR-342-5p mature miRNA
• Sequence: 4 - UGCUAUCUGUGAUUGAGGGACA - 25
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-342-3p

• Accession: MIMAT0006709
• Description: Canis lupus familiaris cfa-miR-342-3p mature miRNA
• Sequence: 41 - UCUCACACAGAAAUCGCACCCGU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415