Stem-loop cfa-mir-345

Accession

MI0008129

Description

Canis lupus familiaris cfa-mir-345 precursor miRNA

Literature search

3 open access papers mention cfa-mir-345
(5 sentences)

Sequence

8606 reads, 27.0 reads per million, 80 experiments

uGCUGACUCUUAGUCCAGUGCUCgugauggcugguGGGCCCUGAACUAGGGGUCUGGAGg
(.(.((((((((((.(((.((((((........)))))).))).)))))))))).).)..

Structure

-- G U          C   U      gau 
  u C GACUCUUAGU CAG GCUCgu   g
  | | |||||||||| ||| ||||||    
  A G CUGGGGAUCA GUC CGGGug   g
gG G U          A   C      guc 

Annotation confidence High

Genome context

8: 68876305-68876364 [+]

Mature cfa-miR-345-5p

• Accession: MIMAT0051830
• Description: Canis lupus familiaris cfa-miR-345-5p mature miRNA
• Sequence: 2 - GCUGACUCUUAGUCCAGUGCUC - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-345-3p

• Accession: MIMAT0006710
• Description: Canis lupus familiaris cfa-miR-345-3p mature miRNA
• Sequence: 36 - GGGCCCUGAACUAGGGGUCUGGAG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415