Stem-loop cfa-mir-127

Accession

MI0008132

Description

Canis lupus familiaris cfa-mir-127 precursor miRNA

Literature search

3 open access papers mention cfa-mir-127
(3 sentences)

Sequence

2694092 reads, 8470.0 reads per million, 81 experiments

ccugCUGAAGCUCAGAGGGCUCUGAUUcagaaagaucaUCGGAUCCGUCUGAGCUUGGCU
...(((.(((((((((.((.((((((((.....))..)))))).)).)))))))))))).

Structure

ccu   G         G  C      --  a 
   gCU AAGCUCAGA GG UCUGAU  Uc g
   ||| ||||||||| || ||||||  || a
   CGG UUCGAGUCU CC AGGCUa  ag a
--U   -         G  U      cu  a 

Annotation confidence High

Genome context

8: 69388428-69388487 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from cfa-mir-127

Mature cfa-miR-127-5p

• Accession: MIMAT0051833
• Description: Canis lupus familiaris cfa-miR-127-5p mature miRNA
• Sequence: 5 - CUGAAGCUCAGAGGGCUCUGAUU - 27
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-127-3p

• Accession: MIMAT0006713
• Description: Canis lupus familiaris cfa-miR-127-3p mature miRNA
• Sequence: 39 - UCGGAUCCGUCUGAGCUUGGCU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415