Stem-loop cfa-mir-411

Accession

MI0008135

Description

Canis lupus familiaris cfa-mir-411 precursor miRNA

Literature search

1 open access papers mention cfa-mir-411
(1 sentences)

Sequence

1180110 reads, 2810.0 reads per million, 81 experiments

AUAGUAGACCGUAUAGCGUACGcuuuaucugugacgUAUGUAACACGGUCCACUAACc
.((((.((((((...((((((((.........).)))))))...)))))).))))...

Structure

--A    A      AUA       - uuu 
   UAGU GACCGU   GCGUACG c   a
   |||| ||||||   ||||||| |   u
   AUCA CUGGCA   UGUAUgc g   c
cCA    C      CAA       a ugu 

Annotation confidence High

Genome context

8: 69536804-69536861 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from cfa-mir-411

Mature cfa-miR-411-5p

• Accession: MIMAT0006716
• Description: Canis lupus familiaris cfa-miR-411-5p mature miRNA
• Sequence: 1 - AUAGUAGACCGUAUAGCGUACG - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-411-3p

• Accession: MIMAT0051836
• Description: Canis lupus familiaris cfa-miR-411-3p mature miRNA
• Sequence: 37 - UAUGUAACACGGUCCACUAAC - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415