Stem-loop cfa-mir-380

Accession

MI0008136

Description

Canis lupus familiaris cfa-mir-380 precursor miRNA

Literature search

3 open access papers mention cfa-mir-380
(4 sentences)

Sequence

176041 reads, 513.0 reads per million, 73 experiments

AUGGUUGACCAUAGAACAUGCGcuagcucuaugucgUAUGUAAUAUGGUCCACGUCU
...((.(((((((..(((((((.((......)).)))))))..))))))).))....

Structure

-AUG  U       GA       c  gc 
    GU GACCAUA  ACAUGCG ua  u
    || |||||||  ||||||| ||   
    CA CUGGUAU  UGUAUgc gu  c
UCUG  C       AA       u  au 

Annotation confidence High

Genome context

8: 69538474-69538530 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from cfa-mir-380

Mature cfa-miR-380-5p

• Accession: MIMAT0051837
• Description: Canis lupus familiaris cfa-miR-380-5p mature miRNA
• Sequence: 1 - AUGGUUGACCAUAGAACAUGCG - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-380-3p

• Accession: MIMAT0006717
• Description: Canis lupus familiaris cfa-miR-380-3p mature miRNA
• Sequence: 37 - UAUGUAAUAUGGUCCACGUCU - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415