miRBase entry: cfa-mir-323

Stem-loop cfa-mir-323


Accession
MI0008137
Description
Canis lupus familiaris cfa-mir-323 precursor miRNA


Sequence

35327 reads, 137.0 reads per million, 75 experiments
AGGUGGUCCGUGGCGCGUUCGcuuuauuuauggcgCACAUUACACGGUCGACCUCU
((((.(.(((((..(.((.((((........)))).)).)..))))).).))))..

Structure
--    G U     GC C  U    uua 
  AGGU G CCGUG  G GU CGcu   u
  |||| | |||||  | || ||||    
  UCCA C GGCAC  U CA gcgg   u
UC    G U     AU A  C    uau 


Annotation confidence High
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Genome context
8: 69539204-69539259 [+]
Clustered miRNAs
11 other miRNAs are < 10 kb from cfa-mir-323
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-323-5p

Accession MIMAT0051838
Description Canis lupus familiaris cfa-miR-323-5p mature miRNA
Sequence 1 - AGGUGGUCCGUGGCGCGUUCG - 21
Evidence experimental
Illumina [1]

Mature cfa-miR-323-3p

Accession MIMAT0006718
Description Canis lupus familiaris cfa-miR-323-3p mature miRNA
Sequence 36 - CACAUUACACGGUCGACCUCU - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18392026
    Discovering microRNAs from deep sequencing data using miRDeep
    "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
    "Nat Biotechnol (2008) 26:407-415