miRBase entry: cfa-mir-543

Stem-loop cfa-mir-543

Accession

MI0008139

Description

Canis familiaris cfa-mir-543 precursor miRNA

Sequence

gaaguugcccguguuuuuuucgcuuuauuugugacgAAACAUUCGCGGUGCACUUCUU
(((((.(((((((..(.((((((.........).))))).)..))))).)))))))..

Structure

--     u  -     uu u     - uuu 
  gaagu gc ccgug  u uuucg c   a
  ||||| || |||||  | ||||| |   u
  CUUCA CG GGCGC  A AAAgc g   u
UU     -  U     UU C     a ugu

Annotation confidence Not enough data

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Genome context

chr8: 69263406-69263463 [+]

Clustered miRNAs

18 other miRNAs are < 10 kb from cfa-mir-543

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-543

Accession	MIMAT0006720
Description	Canis familiaris cfa-miR-543 mature miRNA
Sequence	37 - AAACAUUCGCGGUGCACUUCUU - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415