Stem-loop cfa-mir-543

Accession

MI0008139

Description

Canis lupus familiaris cfa-mir-543 precursor miRNA

Literature search

2 open access papers mention cfa-mir-543
(3 sentences)

Sequence

9692 reads, 38.0 reads per million, 74 experiments

GAAGUUGCCCGUGUUUUUUUCGcuuuauuugugacgAAACAUUCGCGGUGCACUUCUU
(((((.(((((((..(.((((((.........).))))).)..))))).)))))))..

Structure

--     U  -     UU U     - uuu 
  GAAGU GC CCGUG  U UUUCG c   a
  ||||| || |||||  | ||||| |   u
  CUUCA CG GGCGC  A AAAgc g   u
UU     -  U     UU C     a ugu 

Annotation confidence High

Genome context

8: 69545117-69545174 [+]

Clustered miRNAs

18 other miRNAs are < 10 kb from cfa-mir-543

Mature cfa-miR-543-5p

• Accession: MIMAT0051839
• Description: Canis lupus familiaris cfa-miR-543-5p mature miRNA
• Sequence: 1 - GAAGUUGCCCGUGUUUUUUUCG - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-543-3p

• Accession: MIMAT0006720
• Description: Canis lupus familiaris cfa-miR-543-3p mature miRNA
• Sequence: 37 - AAACAUUCGCGGUGCACUUCUU - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415