Stem-loop cfa-mir-495

Accession

MI0008140

Description

Canis lupus familiaris cfa-mir-495 precursor miRNA

Literature search

4 open access papers mention cfa-mir-495
(13 sentences)

Sequence

15082 reads, 38.0 reads per million, 74 experiments

GAAGUUGCCCGUGUUAUUUUCGcuugauacgugccgAAACAAACAUGGUGCACUUCUU
(((((.(((((((((..((((((.........).)))))..))))))).)))))))..

Structure

--     U  -       AU     - uug 
  GAAGU GC CCGUGUU  UUUCG c   a
  ||||| || |||||||  ||||| |   u
  CUUCA CG GGUACAA  AAAgc g   a
UU     -  U       AC     c ugc 

Annotation confidence High

Genome context

8: 69546880-69546937 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from cfa-mir-495

Mature cfa-miR-495-5p

• Accession: MIMAT0051840
• Description: Canis lupus familiaris cfa-miR-495-5p mature miRNA
• Sequence: 1 - GAAGUUGCCCGUGUUAUUUUCG - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-495-3p

• Accession: MIMAT0006721
• Description: Canis lupus familiaris cfa-miR-495-3p mature miRNA
• Sequence: 37 - AAACAAACAUGGUGCACUUCUU - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415