Stem-loop cfa-mir-487b

Accession

MI0008144

Description

Canis lupus familiaris cfa-mir-487b precursor miRNA

Literature search

3 open access papers mention cfa-mir-487b
(4 sentences)

Sequence

55728 reads, 182.0 reads per million, 72 experiments

GUGGUUAUCCCUGUCCUGUUCGUuuuacucaugucgAAUCGUACAGGGUCAUCCACUU
((((....((((((.(.(((((............))))).).))))))....))))..

Structure

--    UUAU      C U     Uuuua 
  GUGG    CCCUGU C GUUCG     c
  ||||    |||||| | |||||      
  CACC    GGGACA G UAAgc     u
UU    UACU      U C     uguac 

Annotation confidence High

Genome context

8: 69557144-69557201 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from cfa-mir-487b

Mature cfa-miR-487b-5p

• Accession: MIMAT0051844
• Description: Canis lupus familiaris cfa-miR-487b-5p mature miRNA
• Sequence: 1 - GUGGUUAUCCCUGUCCUGUUCGU - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-487b-3p

• Accession: MIMAT0006723
• Description: Canis lupus familiaris cfa-miR-487b-3p mature miRNA
• Sequence: 37 - AAUCGUACAGGGUCAUCCACUU - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415