miRBase entry: cfa-mir-487b

Stem-loop cfa-mir-487b

Accession

MI0008144

Description

Canis familiaris cfa-mir-487b precursor miRNA

Sequence

gugguuaucccuguccuguucguuuuacucaugucgAAUCGUACAGGGUCAUCCACUU
((((....((((((.(.(((((............))))).).))))))....))))..

Structure

--    uuau      c u     uuuua 
  gugg    cccugu c guucg     c
  ||||    |||||| | |||||      
  CACC    GGGACA G UAAgc     u
UU    UACU      U C     uguac

Annotation confidence Not enough data

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Genome context

chr8: 69275496-69275553 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from cfa-mir-487b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-487b

Accession	MIMAT0006723
Description	Canis familiaris cfa-miR-487b mature miRNA
Sequence	37 - AAUCGUACAGGGUCAUCCACUU - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415