Stem-loop cfa-mir-382

Accession

MI0008145

Description

Canis lupus familiaris cfa-mir-382 precursor miRNA

Literature search

3 open access papers mention cfa-mir-382
(12 sentences)

Sequence

15172 reads, 36.0 reads per million, 73 experiments

aAGUUGUUCGUGGUGGAUUCGCUUuacuuaugacgAAUCAUUCACGGACAACACUUU
..(((((((((((..(((((((.........).))))))..))))))))))).....

Structure

---aA           UG      - UUu 
     GUUGUUCGUGG  GAUUCG C   a
     |||||||||||  |||||| |   c
     CAACAGGCACU  CUAAgc g   u
UUUCA           UA      a uau 

Annotation confidence High

Genome context

8: 69564769-69564825 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from cfa-mir-382

Mature cfa-miR-382-5p

• Accession: MIMAT0051845
• Description: Canis lupus familiaris cfa-miR-382-5p mature miRNA
• Sequence: 2 - AGUUGUUCGUGGUGGAUUCGCUU - 24
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-382-3p

• Accession: MIMAT0006724
• Description: Canis lupus familiaris cfa-miR-382-3p mature miRNA
• Sequence: 36 - AAUCAUUCACGGACAACACUUU - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415