Stem-loop cfa-mir-409

Accession

MI0008147

Description

Canis lupus familiaris cfa-mir-409 precursor miRNA

Literature search

1 open access papers mention cfa-mir-409
(1 sentences)

Sequence

15312 reads, 33.0 reads per million, 72 experiments

AGGUUACCCGAGCAACUUUGCAucuggacgaCGAAUGUUGCUCGUUGAACCCCU
.((((...(((((((((((((........).)))).))))))))...))))...

Structure

--A    ACC        -    - Auc 
   GGUU   CGAGCAAC UUUG C   u
   ||||   |||||||| |||| |    
   CCAA   GCUCGUUG AAGC g   g
UCC    GUU        U    a cag 

Annotation confidence High

Genome context

8: 69575453-69575506 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from cfa-mir-409

Mature cfa-miR-409-5p

• Accession: MIMAT0051847
• Description: Canis lupus familiaris cfa-miR-409-5p mature miRNA
• Sequence: 1 - AGGUUACCCGAGCAACUUUGCA - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-409-3p

• Accession: MIMAT0006726
• Description: Canis lupus familiaris cfa-miR-409-3p mature miRNA
• Sequence: 32 - CGAAUGUUGCUCGUUGAACCCCU - 54
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415