Stem-loop cfa-mir-410

Accession

MI0008149

Description

Canis lupus familiaris cfa-mir-410 precursor miRNA

Literature search

2 open access papers mention cfa-mir-410
(13 sentences)

Sequence

348339 reads, 1080.0 reads per million, 75 experiments

AGGUUGUCUGUGAUGAGUUCGcuuuauuaaugccgAAUAUAACACAGAUGGCCUGU
((((((((((((.((.((((((.........).))))).)).))))))))))))..

Structure

--            A  A     - uuu 
  AGGUUGUCUGUG UG GUUCG c   a
  |||||||||||| || ||||| |   u
  UCCGGUAGACAC AU UAAgc g   u
UG            A  A     c uaa 

Annotation confidence High

Genome context

8: 69576045-69576100 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from cfa-mir-410

Mature cfa-miR-410-5p

• Accession: MIMAT0051849
• Description: Canis lupus familiaris cfa-miR-410-5p mature miRNA
• Sequence: 1 - AGGUUGUCUGUGAUGAGUUCG - 21
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-410-3p

• Accession: MIMAT0006728
• Description: Canis lupus familiaris cfa-miR-410-3p mature miRNA
• Sequence: 36 - AAUAUAACACAGAUGGCCUGU - 56
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415