Stem-loop cfa-mir-181a-2

Accession

MI0008152

Description

Canis lupus familiaris cfa-mir-181a-2 precursor miRNA

Literature search

2 open access papers mention cfa-mir-181a-2
(2 sentences)

Sequence

10618378 reads, 29530.0 reads per million, 82 experiments

AACAUUCAACGCUGUCGGUGAGuuugggauuugaaaaaACCACCGACCGUUGACUGUACC
.(((.((((((..(((((((.((((...........))))))))))))))))).)))...

Structure

--A   U      CU       A    ggga 
   ACA UCAACG  GUCGGUG Guuu    u
   ||| ||||||  ||||||| ||||    u
   UGU AGUUGC  CAGCCAC CAaa    u
CCA   C      --       -    aaag 

Annotation confidence High

Genome context

9: 59222881-59222940 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-181a-2

Mature cfa-miR-181a-5p

• Accession: MIMAT0006707
• Description: Canis lupus familiaris cfa-miR-181a-5p mature miRNA
• Sequence: 1 - AACAUUCAACGCUGUCGGUGAG - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-181a-2-3p

• Accession: MIMAT0051826
• Description: Canis lupus familiaris cfa-miR-181a-2-3p mature miRNA
• Sequence: 39 - ACCACCGACCGUUGACUGUACC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415