Stem-loop cfa-mir-126

Accession

MI0008154

Description

Canis lupus familiaris cfa-mir-126 precursor miRNA

Literature search

18 open access papers mention cfa-mir-126
(44 sentences)

Sequence

26101444 reads, 24298.0 reads per million, 82 experiments

CAUUAUUACUUUUGGUACGCGcugugacacuucaaacUCGUACCGUGAGUAAUAAUGCG
(((((((((((.(((((((.....(((....)))....))))))).)))))))))))..

Structure

--           U       CGcug   c 
  CAUUAUUACUU UGGUACG     uga a
  ||||||||||| |||||||     |||  
  GUAAUAAUGAG GCCAUGC     acu c
GC           U       -Ucaa   u 

Annotation confidence High

Genome context

9: 49756800-49756858 [-]

Mature cfa-miR-126-5p

• Accession: MIMAT0006730
• Description: Canis lupus familiaris cfa-miR-126-5p mature miRNA
• Sequence: 1 - CAUUAUUACUUUUGGUACGCG - 21
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-126-3p

• Accession: MIMAT0051850
• Description: Canis lupus familiaris cfa-miR-126-3p mature miRNA
• Sequence: 38 - UCGUACCGUGAGUAAUAAUGCG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415