Stem-loop cfa-mir-212

Accession

MI0008155

Description

Canis lupus familiaris cfa-mir-212 precursor miRNA

Literature search

3 open access papers mention cfa-mir-212
(5 sentences)

Sequence

67832 reads, 200.0 reads per million, 80 experiments

ACCUUGGCUCUAGACUGCUUACUgcccgggccgcccucagUAACAGUCUCCAGUCACGGCCA
.((.(((((..((((((.((((((...(((...))).))))))))))))..))))).))...

Structure

--A  U     CU      C      ccc   c 
   CC UGGCU  AGACUG UUACUg   ggg  
   || |||||  |||||| ||||||   ||| c
   GG ACUGA  UCUGAC AAUgac   ccc  
ACC  C     CC      -      --u   g 

Annotation confidence High

Genome context

9: 46984763-46984824 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-212

Mature cfa-miR-212-5p

• Accession: MIMAT0006731
• Description: Canis lupus familiaris cfa-miR-212-5p mature miRNA
• Sequence: 1 - ACCUUGGCUCUAGACUGCUUACU - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-212-3p

• Accession: MIMAT0051851
• Description: Canis lupus familiaris cfa-miR-212-3p mature miRNA
• Sequence: 41 - UAACAGUCUCCAGUCACGGCCA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415