Stem-loop cfa-mir-22

Accession

MI0008157

Description

Canis lupus familiaris cfa-mir-22 precursor miRNA

Literature search

10 open access papers mention cfa-mir-22
(55 sentences)

Sequence

6885839 reads, 17924.0 reads per million, 82 experiments

AGUUCUUCAGUGGCAAGCUUUAuguccugacccagcuaAAGCUGCCAGUUGAAGAACUGU
(((((((((((((((.((((((.((.........))))))))))))).))))))))))..

Structure

--          -     A      u  ccu 
  AGUUCUUCAG UGGCA GCUUUA gu   g
  |||||||||| ||||| |||||| ||   a
  UCAAGAAGUU ACCGU CGAAau cg   c
UG          G     -      -  acc 

Annotation confidence High

Genome context

9: 46679619-46679678 [-]

Mature cfa-miR-22-5p

• Accession: MIMAT0051853
• Description: Canis lupus familiaris cfa-miR-22-5p mature miRNA
• Sequence: 1 - AGUUCUUCAGUGGCAAGCUUUA - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-22-3p

• Accession: MIMAT0006733
• Description: Canis lupus familiaris cfa-miR-22-3p mature miRNA
• Sequence: 39 - AAGCUGCCAGUUGAAGAACUGU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415