Stem-loop cfa-mir-144

Accession

MI0008158

Description

Canis lupus familiaris cfa-mir-144 precursor miRNA

Literature search

9 open access papers mention cfa-mir-144
(15 sentences)

Sequence

854669 reads, 2292.0 reads per million, 78 experiments

aGGAUAUCAUCAUAUACUGUAAGUuugcgacaagauacUACAGUAUAGAUGAUGUACUAG
.((((((((((.(((((((((.((((......))))..))))))))))))))))).))..

Structure

-a  -        A         -A    gc 
  GG AUAUCAUC UAUACUGUA  GUuu  g
  || |||||||| |||||||||  ||||   
  UC UGUAGUAG AUAUGACAU  uaga  a
GA  A        -         ca    ac 

Annotation confidence High

Genome context

9: 43848755-43848814 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-144

Mature cfa-miR-144-5p

• Accession: MIMAT0051854
• Description: Canis lupus familiaris cfa-miR-144-5p mature miRNA
• Sequence: 2 - GGAUAUCAUCAUAUACUGUAAGU - 24
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-144-3p

• Accession: MIMAT0006734
• Description: Canis lupus familiaris cfa-miR-144-3p mature miRNA
• Sequence: 39 - UACAGUAUAGAUGAUGUACUAG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415