Stem-loop cfa-mir-193a

Accession

MI0008159

Description

Canis lupus familiaris cfa-mir-193a precursor miRNA

Literature search

3 open access papers mention cfa-mir-193a
(17 sentences)

Sequence

82676 reads, 173.0 reads per million, 80 experiments

UGGGUCUUUGCGGGCGAGAUGAgggugucgguucAACUGGCCUACAAAGUCCCAGU
((((.(((((.((((.((.((((........)))).)).)))).))))).))))..

Structure

--    U     C    G  A    ggu 
  UGGG CUUUG GGGC AG UGAg   g
  |||| ||||| |||| || ||||    
  ACCC GAAAC UCCG UC Acuu   u
UG    U     A    G  A    ggc 

Annotation confidence High

Genome context

9: 42137126-42137181 [-]

Mature cfa-miR-193a-5p

• Accession: MIMAT0006735
• Description: Canis lupus familiaris cfa-miR-193a-5p mature miRNA
• Sequence: 1 - UGGGUCUUUGCGGGCGAGAUGA - 22
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-193a-3p

• Accession: MIMAT0051855
• Description: Canis lupus familiaris cfa-miR-193a-3p mature miRNA
• Sequence: 35 - AACUGGCCUACAAAGUCCCAGU - 56
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415