Stem-loop cfa-mir-142

Accession

MI0008160

Description

Canis lupus familiaris cfa-mir-142 precursor miRNA

Literature search

19 open access papers mention cfa-mir-142
(32 sentences)

Sequence

4796968 reads, 4708.0 reads per million, 79 experiments

ccCAUAAAGUAGAAAGCACUACUAacagcacuggagggUGUAGUGUUUCCUACUUUAUGGAug
.(((((((((((.(((((((((...(..(....)..)..))))))))).)))))))))))...

Structure

--c           A         UAa ag a 
   cCAUAAAGUAG AAGCACUAC   c  c c
   ||||||||||| |||||||||   |  |  
   GGUAUUUCAUC UUUGUGAUG   g  g u
guA           C         -Ug ga g 

Annotation confidence High

Genome context

9: 33784007-33784069 [-]

Mature cfa-miR-142-5p

• Accession: MIMAT0006736
• Description: Canis lupus familiaris cfa-miR-142-5p mature miRNA
• Sequence: 3 - CAUAAAGUAGAAAGCACUACUA - 24
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-142-3p

• Accession: MIMAT0051856
• Description: Canis lupus familiaris cfa-miR-142-3p mature miRNA
• Sequence: 39 - UGUAGUGUUUCCUACUUUAUGGA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415